PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g13430.5
Common NameLR48_Vigan03g168800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 188aa    MW: 20775.8 Da    PI: 4.4342
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g13430.5genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.3e-153451156
             AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Vang04g13430.5  3 AWGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 45
                    6**********843...6***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.928152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-26153IPR001471AP2/ERF domain
SMARTSM003802.4E-28158IPR001471AP2/ERF domain
CDDcd000186.99E-28154No hitNo description
SuperFamilySSF541718.5E-18253IPR016177DNA-binding domain
PfamPF008479.3E-10345IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MRAWGKWVSE IREPRKKSRI WLGTYPTAEM AARAHDVAAL AIKGHSAYLN FPNLAQDLPR  60
PITTSPKDIQ AAAAKAATTF FDDGKRCEAE KDEQNHTEQA SSSTLCMENT EVEQVQAEEA  120
SPSTLSMDTT QGSSTSHSTA DDDTLFDLPD LFPDGNNGLF FSYSSSWHLC AADSGFRLEE  180
QFLWENY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496759.11e-127PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ72e-58ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0L9U6A81e-140A0A0L9U6A8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVU01e-140A0A0S3RVU0_PHAAN; Uncharacterized protein
STRINGGLYMA01G13410.13e-88(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.17e-47ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]